Concepts and Synthesis |
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Corresponding author: Harriet M. Gold ( harriet.gold@cranfield.ac.uk ) Academic editor: Uta Berger
© 2026 Harriet M. Gold, Alice S. A. Johnston, William D. Rust.
This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Citation:
Gold HM, Johnston ASA, Rust WD (2026) A conceptual framework for scaling up emergent predictions from mechanistic individual-based models. Individual-based Ecology 2: e163207. https://doi.org/10.3897/ibe.2.163207
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Environmental decision-makers need robust, landscape-level predictions of population responses to inform management decisions before implementation. Mechanistic individual-based models (IBMs) can capture how individual behaviour and interactions in heterogeneous environments generate emergent population dynamics, but high computational costs typically restrict applications to small spatial extents. To address this limitation, we synthesise spatial modelling strategies across subfields of ecology and introduce the Spatial Threshold of Emergent Behaviour Stabilisation (STEBS) framework. STEBS capitalises on the biological realism of mechanistic IBMs through an in silico modelling experiment to quantify the Critical Emergence Threshold (CET) — the smallest spatial extent at which emergent system behaviour stabilises. The CET provides a biologically meaningful and computationally efficient scale for developing meta-models that relate environmental variables to emergent population patterns, which can then be extrapolated across unsimulated regions to predict landscape-level dynamics. This approach enables tractable scaling up of mechanistic IBMs, while retaining their biological realism. STEBS therefore offers a systematic pathway for applying IBMs to real-world environmental challenges, enhancing the evidence base for policy and management under accelerating global change. Future development of STEBS into an operational and transferable tool will require empirical validation across diverse species, landscapes and IBM structures, alongside evaluation of whether the upfront investment required to estimate CETs improves predictive efficiency compared to brute-force scaling approaches.
Agent-based modelling, behaviour, decision support, landscape, meta-modelling, physiology, population dynamics, scale dependency, spatial threshold
Environmental decision-making increasingly requires robust predictions of how populations respond to management interventions at the landscape level. Individual-based models (IBMs) have demonstrated predictive power across ecological systems, for example, through forecasting the effects of habitat loss on coastal shorebirds (
Scaling up mechanistic IBMs to entire landscapes or regions quickly becomes computationally intractable due to the magnitude of individuals and interactions being simulated (
Several factors contribute to the computational challenge of scaling up mechanistic IBMs to entire landscapes. First, simulating each modelled individual’s life cycle, movements, decisions and interactions means that a hundredfold increase in model environment area with a tenfold increase in linear spatial extent (e.g. from 5 × 5 km area to 50 × 50 km) can lead to exponential growth in memory use (
Conventional strategies to address the trade-off between realism and tractability in ecological modelling often involve aggregating individuals, behaviour or environmental variables to reduce model complexity (
In this paper, we propose the conceptual Spatial Threshold of Emergent Behaviour Stabilisation (STEBS) framework for systematically scaling up mechanistic IBMs. STEBS is grounded in the principle that emergent ecological patterns, such as habitat structure, species distributions and population dynamics, frequently exhibit scale-dependent behaviour (
Here, STEBS aims to couple insights from landscape ecology with the predictive power of mechanistic IBMs through systematic in silico experiments to identify the spatial threshold at which multiple emergent dynamics stabilise, termed the Critical Emergence Threshold (CET). We first synthesise spatial strategies employed across subfields of ecology to introduce the conceptual foundations of the STEBS framework. Then, we demonstrate a conceptual three-step STEBS approach that involves quantifying the CET, conducting modular simulations and developing a meta-model for efficient, landscape-level predictions that retain the biological realism of mechanistic IBMs. Finally, we identify key research needs to address outstanding questions for the implementation of STEBS as a practical tool for environmental decision support.
| It is important to recognise that the concept of a ‘landscape’ is not fixed, but inherently species- and context-dependent. In landscape ecology, spatial scale (extent and resolution) and heterogeneity are central to understanding ecological patterns and processes ( |
Ecologists have long recognised that spatial scale fundamentally shapes ecological patterns and processes, with interactions at one scale often driving emergent dynamics at another scale (
Cross-scale interactions pose a challenge for ecological modelling, as models must balance the representation of fine-resolution, lower-level mechanisms with the need to generate predictions at broader spatial scales. Nevertheless, the importance of capturing spatial processes has resulted in progressive embedding of spatially explicit environments into models that were traditionally non-spatial or spatially implicit (
IBMs are increasingly used to simulate population dynamics, while accounting for the effects of individual variation, local interactions and adaptive behaviour (
Landscape ecology frequently employs spatially explicit simulations or modelling tools to examine fragmentation, connectivity and habitat mosaics at large spatial extents (
Different subfields of ecology have developed modelling approaches that emphasise different positions along the spectrum of spatial resolution and spatial extent (Fig.
Building on the conceptual overview in Fig.
A common feature of models at the population to ecosystem level is the aggregation of individuals, behaviour or environmental variables (
Poll4pop (
Aggregation can improve computational tractability at larger spatial extents by reducing model complexity, but often obscures the lower-level mechanisms that underpin emergent system dynamics (
Brute-force scaling, running an original detailed model in each cell of a larger landscape grid, enables retention of mechanistic detail across broader spatial extents, but typically demands high-performance computing (
Meta-modelling provides additional scaling routes through either the propagation of outputs from detailed simulations into simpler models at broader spatial extents (
Scale transition theory provides a conceptual and analytical approach for understanding how ecological patterns and processes observed at local scales can aggregate or transition into broader-scale dynamics (
There remains a pressing need for formalised frameworks that can preserve the mechanistic detail underpinning complex emergent dynamics, while enabling tractable predictions at the spatial extents relevant for environmental decision-making. Foundational insights from landscape ecology highlight the importance of capturing the non-linear scaling of processes with spatial extent (
Schematic showing how different species perceive landscapes at different spatial scales (extent and resolution). Four taxa (elephant, bird, bee, earthworm) are illustrated with their associated landscape as gridded representations of habitat heterogeneity aligned with their movement ecology and resolution of perception. As functional traits like body size decrease, the experienced landscape becomes smaller in extent, but finer in resolution.
Relationship between spatial resolution and spatial extent across different subfields of ecology and their associated modelling approaches. Spatial resolution ranges from fine (detailed, small-scale observations or models) to coarse (aggregated, large-scale observations) and spatial extent ranges from local to large (e.g. geographic region, entire ecosystem) scales. Various modelling approaches are positioned according to general spatial resolution and extent ranges, with colours representing different species, trophic groups or habitat patches. Individual-based models (IBMs) represent individual variation and local interactions; population models average across individuals (sometimes differentiated by age/stage/size) in a population; metapopulation models represent networks of local subpopulations linked by dispersal; (meta)community models focus on species interactions within a local habitat or across a network of habitat patches; graph models describe habitat connectivity across landscape mosaics; and ecosystem models estimate biomass structure and flows across trophic or functional groups.
Representative models from different subfields of ecology and their spatial strategies. Spatial strategies refer to different approaches taken by models to reconcile the trade-off between capturing fine-resolution processes and extending models across broad spatial extents. See text for further explanation of each strategy.
| Model type | Model/key reference | Taxa | Spatial extent and resolution | Mechanisms and/or processes | Spatial strategy |
|---|---|---|---|---|---|
| Ecosystem model | Madingley model ( |
Broad functional groups (e.g. herbivores) | Regional to global, 1° × 1° cells (~ 100 km 2) | Metabolism, life cycle, dispersal drive ecosystem trophic dynamics | Aggregation (cohorts with identical traits) |
| Process-based metacommunity model |
|
Multiple species (theoretical) | Regional (e.g. 100 patches), continuous spatial domain | Community dynamics (growth, interaction, turnover), with dispersal | Aggregation (species abundance), patch simplification |
| Metapopulation model |
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Butterfly | Regional (50 × 70 km), network of habitat patches of specified size | Patch occupancy dynamics (extinction, colonisation, connectivity) | Parameterisation (patch occupancy data), patch simplification |
| Mechanistic niche model |
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Various terrestrial species | Regional to continental, microclimate scale (cm–m) integrated in coarse grid (km) | Physiology-driven niche, based on microclimate (energy/water/mass balance) | Hybrid multi-scale (fine microclimate + coarse climate data) |
| Process-based population model | Poll4pop ( |
Wild bees (bumblebees, solitary bees) | Landscape (e.g. 10 km2) to national ( |
Central-place foraging and colony-level population growth, based on floral and nesting resources | Aggregation (population growth and dispersal functions) |
| IBM/ABM | ALMaSS ( |
Multiple (vertebrates, invertebrates) | Landscape (e.g. 100 km2), 1 × 1 m | Behavioural states, life cycle events, species-specific detail (e.g. energetics) | Species-specific aggregation (e.g. super-individuals) |
| Partial integro-differential equation |
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Bumblebees | Landscape (4 km), continuous one-dimensional spatial domain | Forager density via diffusion/advection, resource memory and depletion | Aggregation (population density, diffusion) |
| IBM/ABM | EEEworm ( |
Earthworm | Plot to field (3–8 × 1 m vertical soil profile), 1 × 1 cm | Energy budgets and movement in response to micro-soil conditions | Individual-based simulation: no aggregation |
| Connectivity model | Circuitscape ( |
Birds (great tits, blue tits) | Landscape (urban areas), 5 × 5 m cells | None: landscape connectivity derived using circuit theory from resistance maps, based on habitat suitability | Reduced biological realism: different types of movement behaviour implicit in current flows |
| Process-based population model |
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Caddisfly | Local (riffle) scaled up to regional (stream) level | Population dynamics scaled via non-linear interactions and spatial heterogeneity | Scale transition theory (non-linear averaging) |
The Spatial Threshold of Emergent Behaviour Stabilisation (STEBS) framework is based on the concept that, beyond a certain spatial threshold, here defined as the Critical Emergence Threshold (CET), simulation of mechanistic IBMs at larger spatial extents will yield minimal new population patterns due to the non-linear stabilisation of emergent system behaviour. The first iteration of the conceptual STEBS framework broadly consists of three steps: 1) identify the spatial extent at which multiple emergent dynamics become scale-invariant, i.e. the spatial extent beyond which no new population patterns emerge; 2) develop a meta-model between these scale-invariant patterns and environmental variables; and 3) extrapolate the meta-model to produce landscape-level predictions grounded in mechanistic detail.
Central to the STEBS framework is determination of the CET for a given set of individuals (e.g. species, life stage), defined here as the smallest spatial extent beyond which further increases in modelled extent yield only marginal changes in emergent model outputs. Identification of the CET relies on running a series of mechanistic IBM simulations across progressively larger spatial extents (referred to here as modules). Together, these modules incorporate spatial heterogeneity representative of realistic environmental gradients and variability (
For each individual SPP, at each in a series of modelled extents (e.g. j = 1, 2, 3 … jmax), the sum of the Euclidean distance between SPPj and SPPj-1 is calculated to give a change in emergent patterns, ΔSPP, calculated for a particular spatial extent, j, according to:
Eq. 1
where x̄ represents the modelled replicate-average SPP (e.g. biomass) from a given timestep t and a given spatial extent j, and N is the number of data points in each spatial extent time series. By plotting ΔSPP over spatial extent increments, an emergence-area curve is constructed to describe changes in emergent patterns with increasing area (Fig.
Mechanistic IBM predictions are expected to display high variability in response to early incremental increases in spatial extent as new population patterns emerge due to non-linear interactions and spatial heterogeneity (
Conceptual workflow for quantifying standardised population patterns (SPPs) across spatial extents (j) using an in-silico modelling experiment. a. Sample the target landscape with different spatial extents j (represented by differently coloured boxes with side lengths of j = 2, 3, 5 m) to represent the model landscape. Each spatial extent j is sampled n times to capture environmental heterogeneity; b. Simulate the IBM for each sampled spatial extent (j) with r replicates to capture stochastic variability in population outputs. IBM outputs are used to construct a matrix of simulation outputs across spatial extents; c. Calculate replicate-average SPPs at each spatial extent j by averaging simulation outputs across n samples and r replicates.
Conceptual illustration of the Critical Emergence Threshold (CET) for several emergent patterns. a. Several emergent population outputs from simulation of a mechanistic IBM shown as standardised population patterns (SPPs). As the mechanistic IBM is simulated at incremental spatial extents, panel a demonstrates expected early variability, mid-scale convergence and large-scale stabilisation of SPPs. b. As spatial extent increases, the sum Euclidean distance between replicate mean SPP (ΔSPP) approaches zero at the CET (marked by the dashed vertical line beyond which the curves in both panels plateau, which can be estimated visually or calculated). A global CET can be taken once all patterns have stabilised with scale or trait-dependant CETs can be estimated for each simulated population output (e.g. biomass).
The CET identifies the spatial extent beyond which emergent population patterns become scale invariant and, therefore, represents the optimal level at which to develop meta-models for extrapolation to broader spatial extents where mechanistic IBMs incur large computational demands. Meta-models are computationally efficient approximations, trained on input-output relationships, that can be used to scale up modelled emergent patterns (
In the final step, the meta-model is applied across unsimulated regions of the landscape using spatial layers of environmental variables, generating spatially explicit predictions of population dynamics, species distributions or management outcomes at low computational cost (Fig.
Illustrative example of the scaling up pipeline after identifying the CET for a given species and landscape. a. The landscape is sub-sampled into CET modules to ensure that sufficient environmental heterogeneity is represented. Values of key environmental variables (e.g. temperature, food availability, habitat composition) are shown in shades of green; b. IBM simulations of each module (for r replicates to capture stochasticity) are used to construct a meta-model linking environmental variables to standardised population patterns (SPPs); c The meta-model is then applied across the full landscape to generate spatially explicit predictions of population dynamics (e.g. biomass, stage structure), shown in shades of blue. Colours in a) and c) distinguish environmental inputs (green) from population-level predictions (blue).
Here, we introduce STEBS, a framework for producing mechanistically informed population predictions at policy-relevant spatial scales. Across subfields of ecology, modelling approaches employ spatial strategies to balance biological realism and broad-scale prediction, typically involving aggregation of processes or states to manage computational costs (Table
The framework presented here promises to advance both theory, by formalising CET as a stabilisation point and practice, by embedding mechanistic insight within scalable prediction tools for robust decision support. Unlike brute-force scaling that simply extends mechanistic IBMs over larger domains via high-performance computing (
STEBS supports calls for mechanistically grounded, landscape-level ecological risk assessments that reflect fragmented and managed environments (
While STEBS offers a promising pathway to reduce the computational burden of landscape-level simulation, its utility depends on several key assumptions. Most critically, the framework assumes that a CET can be reliably identified, but for highly complex systems or particularly computationally demanding models, the limits of tractability may be exceeded before reaching the spatial extent of emergent system behaviour stabilisation (Fig.
A meta-model can only reflect relationships between environmental variables and population patterns that emerge from the mechanisms and processes encoded in the original model and so the landscape-level predictions yielded by STEBS will also depend on the IBM structure. The inclusion of key individual-level mechanisms (e.g. physiology, movement behaviour) should ensure flexibility (
Multi-scale strategies that parallel the STEBS framework are commonly employed in climate modelling. Statistical downscaling, for instance, establishes empirical relationships between large-scale atmospheric predictors and local climate conditions, enabling the translation of coarse-resolution climate model outputs to fine-resolution, location-specific projections (
Methodological advances in climate and hydrology offer both inspiration and caution for ecological modelling. Dynamical and statistical downscaling, parameter regionalisation and surrogate modelling techniques enable efficient cross-scale simulation, but also present challenges including scale mismatches, uncertainty propagation and risks of overfitting (
| Transitioning the STEBS framework from a conceptual to an operational tool demands rigorous empirical testing and iterative refinement using well-validated mechanistic IBMs across diverse systems. Future research should target both model-based experimentation and cross-system application to address the outstanding questions below. Addressing these questions in future research will improve the reproducibility, transferability and practical value of STEBS in ecological modelling. |
| (1) How transferable is CET across species and landscapes? CET is inherently species- and context-specific, reflecting traits like body size, dispersal ability and behavioural plasticity, alongside landscape features, such as heterogeneity and resource distribution. Comparative studies across taxa and ecosystems are needed to explore how CET varies and whether general rules or trait-based scaling functions can predict CET under different conditions, including seasonal shifts and multi-stressor regimes. |
| (2) How sensitive are STEBS-based predictions to landscape structure? CET is derived from the principle that landscape configuration, composition and heterogeneity will significantly influence SPP convergence. Systematic exploration of landscape structures, for example, fragmented, patchy or continuous, will help define the robustness and limits of CET-based scaling. |
| (3) How does IBM organisation influence CET? Mechanistic IBMs vary widely in how they represent processes (e.g. resource competition, energy budgets, dispersal rules). It is essential to understand how model structure, such as the level of individual detail, behavioural algorithms or interaction complexity, affects the shape of emergence-area curves and the resulting CET. |
| (4) What STEBS extensions are needed for adaptive and decision support workflows? STEBS could be integrated into adaptive management and iterative modelling pipelines by utilising automation tools for CET estimation, dynamic updating as new data become available and interfaces with decision support systems. Balancing the up-front computational investment against downstream flexibility should remain a priority during STEBS development. |
The STEBS framework provides a practical solution to a longstanding trade-off in ecological modelling by enabling mechanistic simulations to provide predictions at the landscape level. This is achieved by identifying the CET, the smallest spatial extent at which emergent system behaviour stabilises, as the optimal scale for developing meta-models that preserve fine-resolution biological realism, while generating broad-scale predictions. The upfront investment required to estimate CETs is, in theory, offset by the simultaneous optimisation of ecological interpretability, predictive power and tractability compared to alternative scaling approaches. Advancing the conceptual STEBS framework outlined here to a fully operational and transferrable tool will require empirical testing with diverse species, refinement of methods for CET estimation, careful sensitivity analyses to landscape patterns and model structure and incorporating STEBS into adaptive modelling workflows. As ecological models become increasingly central to environmental policy and management, frameworks like STEBS will be vital for ensuring that detailed, mechanistic insights can be applied to large-scale decisions. By supporting computationally efficient and ecologically meaningful predictions, STEBS can become a cornerstone tool for biodiversity conservation, environmental risk assessment and land-use policy design in the face of global change.
The authors thank the editor Uta Berger, Jacob Nabe-Nielsen, and an anonymous reviewer for helpful comments that greatly improved the quality of the manuscript.
The authors have declared that no competing interests exist.
No ethical statement was reported.
No use of AI was reported.
This work is supported by UKRI NERC (grant no. NE/W003031/1) and UKRI BBSRC FoodBioSystems Doctoral Training Partnership (grant no. BB/T008776/1).
Conceptualization: WDR, ASAJ, HMG; Funding Acquisition: ASAJ; Investigation: HMG, ASAJ, WDR; Methodology: ASAJ, WDR, HMG; Project Administration: ASAJ; Supervision: ASAJ; Visualization: WDR, ASAJ, HMG; Writing – Original Draft: ASAJ, HMG, WDR; Writing – Review & Editing: HMG, WDR, ASAJ.
Harriet M. Gold https://orcid.org/0000-0003-2256-7596
Alice S. A. Johnston https://orcid.org/0000-0001-8781-4039
Will D. Rust https://orcid.org/0000-0001-6614-0063
All of the data that support the findings of this study are available in the main text.